Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938898.1_cds_XP_016483633.1_74731
CDS Infomation

[gene=LOC107804283] [db_xref=GeneID:107804283] [protein=regulator of nonsense transcripts UPF3-like isoform X2] [protein_id=XP_016483633.1] [location=join(111544..111683,116395..116501,116755..116850,116937..117035,117178..117257,118452..118565,118953..119097,121714..121781,122834..123275,123558..123656,123789..123886,123992..124030)] [gbkey=CDS]
Sequence

ATGAAAGGACCGTTAGATCGAACAAAAGTAGTGCTGCGGCACTTGCCGCCTACAATTTCT
CAGTCTATGCTTGTTGAGCAAGTTGTTTCCCGATTCACTGGTCGCTATAACTGGTTCTCT
TTTCGTCCTGGCAAGTCCAGCCAGAAGCATCAAACTTATTCAAGAGCCTATGTTGACTTT
AAGAGGCCAGAAGATGTTATCGAGTTTGCCGAGTTCTTTGATGGACACGTTTTTGTAAAT
GAGAAAGGCACTCAGTTCAAAACTATTGTTGAGTATGCTCCTTCACAGCGTGCTCCAAAA
CGCTGGTCCAAGAAGGATGGCCGCGAAGGAACCATCTTGAAAGATCCTGAATATCTGGAG
TTCCTTGAATTTATTGCAAAGCCTATTGAGAATCTTCCGAGTGCAGAAATACAATTGGAA
AGAAAGGAAGCTGAACGAGCTGGTTCTGCAAAGAATGCTCCTATAGTTACTCCTTTGATG
GACTACATACGTCAGAAAAGAGCTGCCAAGAGTGGAGCTCGGAAATCTCTATCTAATGGG
AGACCGACCAGAAGAGTGGACGGCACATCCTCAGGAAGTCCTAGCTCAAGTGCATTTAAA
CAAGGCTCTGAAAAGAGAAGGGTTTCTACAACCATGTATGTTCTTCGAGATAGTTCTAAG
GCTGGGAGTGGCAAAGACAAAAGACATGTTTTAGTTCCAAATCGTGATGGTCAGCAGCAG
GCTGAGAAGTCTGGTACCTCTGCTCCTGGATCTGGGGCTGATGCAGTTGAAGAGGAAACT
GGTGGAGCTGCTGATGCTGGGAAGAAGAAAATCCTGCTCTTGAAGGGAAAGGAAAAAGAA
ATTCCTAATGTTTCTAGTGGTTCAGTGATTCAGGGCAATGCGGCACCTATTGTCAAGAAT
ACAATAACATCATCTGCTCCGCAACAGAACCAGCGCCGTGAGGCAAGTGGAAAGATCATT
AGAAGTATTCTTCTCGAGGATGCTCATCAAAATCAGGCTCTTTCTGCATCCCAACAAGAA
CAGCACAGCCAGGATAAGGACAAAAAGCCTCCTAGGCCACCAAGCGTGCAGTTGTTTCAG
AAAGAAATTAACGGAGTTAATGAGGATAAGGTTGTTGGAACTGATTTGCGTGTTGTCCAC
ACTGAAAAGCAGGAAAGACGCTCTAGGATTAGGGATAGGCCTGATCGTGGTGTTTGGACT
CCTCTTCGTCGTTCTGATAGGTTGCATGCTAGTGATGAATCCATGTCTTCATCTACCTCT
CAATCTTCTGAAGTGCTGGATTCTCTTGAAGGAACTCAGGGTGAAACCAAAAATGATCTG
CCAAATGTTCGTGGTGGGGAGTTCAGACCCATGGGAAGCGGGCGTAATTCTCATTCTTCT
TTTGACAATGGTACTTATAAACGTCGTGGTATGAGGGATGATGGCATTTCAGTAGGGGAA
GGAAAACCCTTGAGAAGGGGAGGTCCTTCTAACTATGGTACCCATGAGAAACAAGTGTGG
GTCCAAAAGTCAAGTTCTGGTACTTAA

Peptide Sequence

PEP ID

XP_016483633.1
PEP Infomation

PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2 [Nicotiana tabacum]
Sequence

MKGPLDRTKVVLRHLPPTISQSMLVEQVVSRFTGRYNWFSFRPGKSSQKHQTYSRAYVDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRAPKRWSKKDGREGTILKDPEYLE
FLEFIAKPIENLPSAEIQLERKEAERAGSAKNAPIVTPLMDYIRQKRAAKSGARKSLSNG
RPTRRVDGTSSGSPSSSAFKQGSEKRRVSTTMYVLRDSSKAGSGKDKRHVLVPNRDGQQQ
AEKSGTSAPGSGADAVEEETGGAADAGKKKILLLKGKEKEIPNVSSGSVIQGNAAPIVKN
TITSSAPQQNQRREASGKIIRSILLEDAHQNQALSASQQEQHSQDKDKKPPRPPSVQLFQ
KEINGVNEDKVVGTDLRVVHTEKQERRSRIRDRPDRGVWTPLRRSDRLHASDESMSSSTS
QSSEVLDSLEGTQGETKNDLPNVRGGEFRPMGSGRNSHSSFDNGTYKRRGMRDDGISVGE
GKPLRRGGPSNYGTHEKQVWVQKSSSGT

Transcript Sequence

Gene sequence data has not been registered.